Scaffold Ga0104986_1078

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1078
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10565
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003066	Metagenome / Metatranscriptome	509	Y
F034852	Metagenome / Metatranscriptome	173	N
F060718	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_10781	F034852	N/A	GHLDTVIKTICHEIIHMICYLEAPKTEKYTSHKGLFLKLQKRVANTLGYDPKEL*
Ga0104986_107816	F003066	GAGG	MKKEPAGYLYEEFDTKTGELKKSYLWSFHPKELSYLNDLKGSTHHIKITPLFRGDEFEEYKAMNKYDSKKLVEANNGL*
Ga0104986_10783	F060718	N/A	MIVLNIFNFIGLAILKLLVVSLLFVAMGFSILFMYAMQYLTQALTYIDKNVN*