 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007734 Open in IMG/M |
| Scaffold ID | Ga0104986_1074 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10550 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008616 | Metagenome / Metatranscriptome | 330 | Y |
| F008811 | Metagenome / Metatranscriptome | 327 | N |
| F012447 | Metagenome | 280 | Y |
| F013411 | Metagenome / Metatranscriptome | 271 | Y |
| F030061 | Metagenome | 186 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104986_10741 | F013411 | N/A | LDLYVDPNAVATTIDESAFIVVPSSVAIYESPVLRLSTNTPTSGEIETALYGYMATGVLVSGGVRRFNLT* |
| Ga0104986_10743 | F030061 | N/A | MALSDLRSTLKTALTSNTNYSCYDHVPEIIIPPACLILASDPYLEPMVIGNSKNYYVRLTLEVVSTTYSNPSALKNLEDDIETILGLIPLNYLVLSVSSPRIRQTNSTDLLTAEIQLQTAYTG* |
| Ga0104986_10744 | F008811 | AGG | MATTILSGRQLTLTIATKNYSEQILSSAINFATERLTFDTLAGKAFKYIDSNVTLDITFLNDAGKTPDSLYKALWDATETAPDTALAFVLTLQTGVTLTGTVLPQYPGVSASGADAQQCSVSLQVVGIPTEDLTA* |
| Ga0104986_10745 | F008616 | AGG | MLKLKIRWELETGEVYEEWTRPNELAQAEKELYNNRSIIKILTEESSPSNQLLLFLGHKIQQRVTKKMENFETWKSTITDIAAVDFETANFTKPDQSGA* |
| Ga0104986_10746 | F012447 | GAG | MAKTIQLVKVDKDYRGLLRAFSKMDDIAKNDMKKIAQELAERGANYAKGAANNAPYNVRQAKAVAESIKVSKSDKAPSFSIGGNRKVGSSAFSAGYVIMGNEFGSKQYKQFPKRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYEQIRNAWKAGL* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |