Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1072 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1072 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10513
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10513

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F033771	Metagenome	176	N
F045056	Metagenome	153	N
F063621	Metagenome	129	N
F067885	Metagenome	125	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_107211	F045056	N/A	MKFTTEIEGDVLGVGADVTKEFSLSRSPDVNAALIRWMQDVIKLTVEGIERVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRSAPFSFRSIYPSASHVAAIRKWAIDKGLGIPADEIDAAAYNIAKSIKRRGIKGRPFLNPVLSEAKMDELVTSIAQVVGKEISISINV*
Ga0104986_107212	F063621	N/A	MSITVISALPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNNGFFGVSKVVETLIAPKIPQLTSGWQDGGYAVNTNLTFREEFGSPPTVATGGTASASLIAWQAAFRQQDYAAYSPSAYIAATVSGDTPAIKVFSNRPVTSTLGSGDSDFIGVLSNVSGIALRVTYDDGTPRNPFLVTGSVSAISNIINAGPYGVYNLTALQCSDGNAGSVNFPANGGKIAVLVTFNTAGTNTSAFSRTAAYTYVIDNCQRYNDLRVFFRNMYGGIDGYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYSPECWIQLGTQLVPVVVQTNTYNVRKRVVDKLQQISVDVQVGYENTAL*
Ga0104986_10722	F067885	N/A	MTLDEAMQVLSVKHKLDGYYASQTMSLSPGEVSMLENVANANGYGRTNWWCGSCAVSRLQEMMADAQDARARLSVE*
Ga0104986_10729	F033771	N/A	MSLLNKITVDQFQRIVSIEANSIYTTSDKKIGVIAVIDNVPIEQVKKMTIAEVNKRYAEINAASKSLSSLAAKQHAKVAGKWYRFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYAAFFLQLSEPLLTIMRRSLTDQQKTTTTAKV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1072

Overview

Ecosystem & Geography

Associated Families

Sequences