Scaffold Ga0104986_1071

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1071
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10511
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009524	Metagenome / Metatranscriptome	316	Y
F036677	Metagenome	169	N
F048273	Metagenome	148	N
F082379	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_107113	F048273	GGAG	MTPRQIDQLIERLDSHSAKLDEVRSDLDRIKGGLVVAGALLFSVLIPLLASLLSK*
Ga0104986_10716	F009524	N/A	MTDLTILDAIAARLEAVTKPSGYTLRKAYATPPESLPVVPAAILFPGDDTITVGNGNRVTVLTVAIRIYLLPIPRMDDKYRDLYTWRSWLRTAFDGAVTISGNAVQVAVAGTTLGTDTYADQDYLTVEATAEVTVYDTVAFTA*
Ga0104986_10718	F082379	AGGAGG	MDTVKIALEGEYAGWTAELRKTVSARILLDLESGDSQRSLTAFSKLVVTHNFKGLDGKPCEDVLDAPVDALTQTLEAWGKANQPDPK*
Ga0104986_10719	F036677	AGG	MPAAIVVEGKFDRNYDQLRLGFLKGSNPSAFKRLMTFATLNAARTLQKPIREKAPRGATGNLRKKVLARKARFNNPAAVVGIKGGRKGVFYGWLVVGGQGTRRTTPNGTFTVKGVKPNRFVDEVVKKQSNIDRAVESYSKTVAAFFNDEPFRNTILKFKRGNQR*