Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1065 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1065 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10434
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (71.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10434

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (71.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F024785	Metagenome	204	Y
F029433	Metagenome	188	Y
F032279	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_106512	F003213	GGA	MNSKKINRAKRQIGDQTTKGGLLGIMIYALSRNNVDPVLIGLLVPVVASVLAWVSTKIGDPDLACMFIPDDKKEV*
Ga0104986_106513	F024785	N/A	LKPYTVNAAPIVQAPLAGMDYWITRAIRHSNKCLWNNGSWMIRDIKNKPGTISNHAKGLAVDLSYRYNSSNNAGRTKSLPYIIKLLENADTLGIELVIDYALMRSWKCDRGTWIKGKYQTGDWYHIEVNPVMAHSEQLAKQAWDKVFGVIPAVIKKPV*
Ga0104986_106514	F032279	GAGG	MPFIIKTIIAFALSAIGLGIYHVPQPRPDMASTTPTDKPYEAVGGFGQAMADIYRYVPPVTTTTPPAPVYRHGDCSWLPAVAMQAGWSAEQIPQLTKYALRESGCCPNRAGGDIVDKNCNITGVAEWSHRSDSGLMQINGVHWLPNHAQYDGLVCKQMAICTQAPLLDALTNLRAALLIYSRVGWSAWDICHRTKTCK*
Ga0104986_106515	F013413	GAG	VLVNGCVRSYSATTVIYHVQNINQNRKEKTMTENEYDETFDMQMEKEHQETLRRMQEFRLIGEQISKMPETPKHVLEIEVRYLMGIISELETRVKELESEVRRLEMLVTRA*
Ga0104986_106517	F014620	AGAAG	MNNQLEMFAPSVGLGGTYERPAINREIVVIAREAKQTSVDAALKAKPKTGKKRQRVHAYLLGRPATDEEIEIALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNEAIVWRCV*
Ga0104986_10653	F029433	GAG	MDYEVTSNRLNGYNWGDIIKEADLGDLTTDLEFLVDSGHLSPLKPKKSAKTINTEQKD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1065

Overview

Ecosystem & Geography

Associated Families

Sequences