Scaffold Ga0104986_1047

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1047
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10322
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F007467	Metagenome / Metatranscriptome	350	Y
F021063	Metagenome / Metatranscriptome	220	N
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_104711	F002009	AGGA	MTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIRKEVPRL*
Ga0104986_104713	F003304	AGG	MKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSVDFILLDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAFLDRKPDMVKLAAAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWFNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIQADEAKLVELGR*
Ga0104986_104714	F021063	GGAG	VRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVAIDNRTLLRKLKENDYVLPT*
Ga0104986_10472	F025460	AGGAG	MAVLDIPAMMDMFRQDELQKQAVAEAQRKQALEERAMAIKEQPDVDFTFEKGGLKVKGKLKDLPTLSQDPAFAPYLAGIGSTITNEQSLENEEVQAQRESINDRLRKLSAERLKQELEIAKGDTRTGAMELGLGLVGLKKRSDVMKELEAERGVLQGRIAELGFNRQTGQMQTETPEGAPTATEPSAPAIAAPATEQQPAQPQTPKNFNSLQEARAAGVKPGELIYINGKPGRLQARQ*
Ga0104986_10475	F030376	GAG	MKAITMITLTAMLMASVMAEDEDADAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTDGFYYKSGSSVVGKDETFISKSRNFFYGTSTTIKAGSAYMNGDAVWVGSQEEDND*
Ga0104986_10477	F007467	N/A	VNEKEAWAKFEAGLKDTESFDEAVAWVKQNKKIVEKLTMMAMIRRFNDDISHANKTWRN*