Scaffold Ga0104986_1040

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1040
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10302
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037219	Metagenome	168	Y
F053263	Metagenome	141	Y
F060871	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_104017	F037219	GGAG	MATQSKQWKEWEREVARDLGGTRTGPRGFDVPDVIDLPGGFSPECKYQKRLALKTEDLKQAEHNARGSEWALFLREGRTGRRFVVVPYKTYVKMWNEIHADKED*
Ga0104986_104018	F053263	AGGA	MSDYITVAGLVQFDPRTRQAGDKTVRDVVIRAIGSNKNFSITVWPEKAGVAINKGDFLVVDGKHTQSVGQNKDGESVTYNNMSAGTLFRFAGEGGAAAPSAPVAAAPAATGDDFPF*
Ga0104986_10409	F060871	AGGAG	MIPDTLTERFHHTLVRKNQSGQDYVSIDGYINRLNEVLGHAWAWQINDWKLYPDAAPATKNGKPQYLSVVQGTLTIILNDIGVVSIGTDEDSFLTTQRAQVSRDGIGSSINFDPDTSVKTAQAEALKKACHQFGIALYLWQEAEREFIALQKAASTNDIALKSLAVAYTNRVHESDPATMPDKEIIMETLNVSDLSTATIRGRFTDMGVL*