Scaffold Ga0104986_1027

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1027
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10153
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F021759	Metagenome	217	N
F031461	Metagenome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_102710	F031461	N/A	LPETSTPQTTEAEVESSSTTTIPEPDQPITDEKVKQILEALEDAAPAQIVAAIEQVLASNITSDQAVSIASSPEVLAAITQEQAEAIFEQIIVEELSVEQADELVAVLNEAPTKVKKAFQETINVFTGLFDSFQMVGQTIPVGERRTLVAVSNTLVAVGASLRRRETK*
Ga0104986_10275	F005528	AGGA	MRILTAILATLTSLTISLGIAQAVSAPAHSSVAVIALQPLWQADRLDPIQPIRYRHGDTSWLPTLAKQAGWPDHAIPKLTQIVLRESGGCPNRRGGDIVDKDCNITGVSEWNHRSDTGLLQINGVNYDPSRNKWAAICRELDICTQDPLLDPLTNLKAGLVLYRLSGFDPWNPCNWRVCKASTTSVP*
Ga0104986_10276	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTDPAEVESVGFLLATGDGGKPDHVTLYQSRNEDSIDHVLHIPVGMVKNIKVLMNLEIKI*
Ga0104986_10277	F021759	AGAAGG	VTWTPDATVLAAAVATLGGIIIALMQLKGFRDENRADHAVVQKRLDNLIDMVGKQGARLTSHLDWHVTKEPSGSLTKTKQVATRKKK*