Scaffold Ga0104986_1024

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1024
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10136
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002214	Metagenome	582	Y
F002433	Metagenome / Metatranscriptome	559	Y
F007466	Metagenome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_10241	F002433	N/A	VSVGEWTAVGGLAMAILTAIYSSMRVIVRSIMSELSPNGGSSIKDQVSRIEARLDQ
Ga0104986_10244	F002214	AGGAG	MGPVQFNINNQTKYDLKIQSSNGATAEAVAGASTQLDFTPDDTNITNAMRWYQDGICILQGSVAWSAGGSGADDGWTSSNIICMNGSMNGESFSGCNEGWVEMQPYNLMANGGEVSVTYTNA*
Ga0104986_10247	F007466	AGG	MTQWAPVWRVKIDGTDVTDSVIANLTITSGRTNIYTQAQAGYCSVTLIIFGQAALPYEINDTISIEVKDTSAAYVPIFGGSVVDIAVSVSQVGSSAYTQEVTITALGALARLQKALTDGVLTQDFDGNQIATILSQVLFNQWQQVPAALTWASYDPTVTWANAENNGYGEIDTPGNYELAQRASSRTVVYDLVAALATSGLGYLYEDASGLISYGDSTHRTTYLATYGYTDLTANQALGRGITIKTRAGDVRNDVTLKYGILSANEVSDTDAASISTYGDLAQIITTTIKHAADATSQAAFYLALRAYPQPIFDSITYALTNPELDNADRDALINVFMGQPIALNDLPSNMSAGVFQGFVEGWTFRASYNQLDVTLLMSPLAYSLQAMTWSDVPIVETWTTVSPTLDWANATIVS*