NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102951_1199040

Scaffold Ga0102951_1199040


Overview

Basic Information
Taxon OID3300007725 Open in IMG/M
Scaffold IDGa0102951_1199040 Open in IMG/M
Source Dataset NameWater microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)566
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.496Long. (o)-122.1329Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013295Metagenome272N
F024204Metagenome207N

Sequences

Protein IDFamilyRBSSequence
Ga0102951_11990401F013295AGGGGGMKINNLTPKQFARREIIKYLRDLFDNPQKYIKDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGES*
Ga0102951_11990402F024204AGGGGGMNNYSYLEILEDGIEVCASCGGANINANRNIDDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKETLNKINRGEL*

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