NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105051_10426299

Scaffold Ga0105051_10426299


Overview

Basic Information
Taxon OID3300007722 Open in IMG/M
Scaffold IDGa0105051_10426299 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)988
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009733Metagenome313N
F017930Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0105051_104262991F009733AGGAGVSEIDQDLHVDTVEPEPVKKKPTSSKHPKVLDETERARAIVRAKLKG
Ga0105051_104262992F017930GGAGGMIIPTALEYARPGEEWTLDGDDYAGLTWLSDTPKPTEQEITDAYPLAVKALAAKEKSRVKAISDARAFALSLGFTPVMLAVMYPQLEEPLSE*

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