Scaffold Ga0105051_10274244

Overview

Basic Information

• Taxon OID: 3300007722
• Scaffold ID: Ga0105051_10274244
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1276
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003376	Metagenome	490	Y
F043231	Metagenome	156	Y
F060621	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105051_102742441	F043231	AGGAG	MIQTNWSRDGLRLKSDNCRLQDKGAVQGQSESRWRDIAHRRGGREVRLARGGIRDHDAFLGHEMRGPKGNGRGGVSMAGGREGQGARKGDWVRGHRLPSPPWFVQNLLKYFGFLSQ*
Ga0105051_102742442	F003376	GGAGG	VQGQSEKQCRSIDHRGGREARLARGGIREHDAFVGHKMRGPAGTERGGISMAGGREGQGARKENGVK*
Ga0105051_102742443	F060621	N/A	GDNDQIANRDLKLKFISIRKVKTEEEKVKHTHRFKDRIFVIKQN*