Basic Information | |
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Taxon OID | 3300007722 Open in IMG/M |
Scaffold ID | Ga0105051_10170489 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1678 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Fryxell | |||||||
Coordinates | Lat. (o) | -77.605 | Long. (o) | 163.163 | Alt. (m) | Depth (m) | 18 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009733 | Metagenome | 313 | N |
F017930 | Metagenome | 238 | Y |
F028432 | Metagenome | 191 | N |
Protein ID | Family | RBS | Sequence |
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Ga0105051_101704892 | F009733 | GGA | MSEIDQELHVDTPPETVEPKKKPTSSKHPKVADETERARAIVRAKLKR* |
Ga0105051_101704893 | F017930 | GGAG | MTDIAFTLTHSHPGSEWILDGDDYAGLTWLSDTPKPTEQEITDAYPLAVKAVASKEKARVKALTDARTHALSLGFTDAMLAVMYPQLTEGA* |
Ga0105051_101704895 | F028432 | N/A | TDATTRAAGIMTAQANGLWNLGQISVLVDQLNPADTDKLLDLVSGSLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWSEVGAGAQWFEIITQSDLVRL* |
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