NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102827_1004961

Scaffold Ga0102827_1004961


Overview

Basic Information
Taxon OID3300007715 Open in IMG/M
Scaffold IDGa0102827_1004961 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG S.751
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3093
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008782Metagenome / Metatranscriptome328Y
F009300Metagenome320Y
F024889Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0102827_10049612F008782N/AMKKPIFRVFVSYEIQSRKVVTRKVITGILDTFVLTSNIKEIENDQELIDRICYINKKNLNKVDVIITSIDIENQYGETTDRFEDEY*
Ga0102827_10049614F024889N/AMNSVTIGALMIVGVVILYIFALSYVEGKITRQENEKLENNIDKLDDKA*
Ga0102827_10049619F009300N/ASADVYNKNTEKYRGNQEHSISQLGIFAELIARHLMENNNGIKYKAALLLEERPIVEADLIMQGIGETHYIDVKGVRSGGDTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN*

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