Scaffold Ga0102827_1004961

Overview

Basic Information

• Taxon OID: 3300007715
• Scaffold ID: Ga0102827_1004961
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG S.751
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3093
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F009300	Metagenome	320	Y
F024889	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102827_10049612	F008782	N/A	MKKPIFRVFVSYEIQSRKVVTRKVITGILDTFVLTSNIKEIENDQELIDRICYINKKNLNKVDVIITSIDIENQYGETTDRFEDEY*
Ga0102827_10049614	F024889	N/A	MNSVTIGALMIVGVVILYIFALSYVEGKITRQENEKLENNIDKLDDKA*
Ga0102827_10049619	F009300	N/A	SADVYNKNTEKYRGNQEHSISQLGIFAELIARHLMENNNGIKYKAALLLEERPIVEADLIMQGIGETHYIDVKGVRSGGDTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN*