Scaffold Ga0102859_1101566

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1101566
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 828
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040590	Metagenome	161	Y
F044446	Metagenome / Metatranscriptome	154	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_11015661	F044446	AGG	MATYDIEALKADLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKVPTDFQTDLNPYIDRKELIPVDEKKKIPSRSTDLPD
Ga0102859_11015662	F040590	N/A	MSYGKVISGGKQMTNGLTKGINSKLKGFEDSHKRSQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPTSV*
Ga0102859_11015663	F099270	AGG	MSTNFLYAQSPNRTGNVSKHCPTKSGGSTNVTGPKHGVSGPTGQQGAPKATGNIASRNQKVQVSTHADYCGCIKNDGYMDKSTKNYLG*