Scaffold Ga0102859_1011838

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1011838
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2174
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012775	Metagenome	277	Y
F024554	Metagenome	205	Y
F027851	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_10118382	F027851	GAGG	MFQAKSILSKLLNKTIGIPEVNINKLPFANKIVGDWEEKSMKDLIKQLPKETIQRLIKVCQEELKTK*
Ga0102859_10118384	F012775	AGG	MKIFSQITRPLIFLNLKVRSRRWPEAYYIYRDEEKLMDSIGNLFYYSWEDFIRLHSHILDNAGPIWEIYEEVEFDNL*
Ga0102859_10118385	F024554	GGAGG	MKKAIVLWCLLYIIISGVNAQKLPQVKNFSTQVELCYCVGTPSNYHVKLKWDLIPKCTRYNIYRVQQGIKPDYNKPFAKLTNNENMTIDRNVKYQQKWDYYVAGLVPSGYLKMSEKSTVTIPLLVLKNPEAPTNLRTFGFWDNGPFDILQWEPSPEATYYNIYRYDNKIGSSKTNSFTVSKLIYQDHWTYTVTAVDKYGLESLPSNLGMARGSWAPNYNFGWRTNPPSTPGKYVVSPEWNRGRPRNFIKWQDQQVWGQDAPNAYNVYRDGVIVCSGLWSQYYIDTNVVSGKTYKYQIGSVNRDQFK