Scaffold Ga0102859_1005672

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1005672
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2975
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F009682	Metagenome / Metatranscriptome	314	Y
F022862	Metagenome / Metatranscriptome	212	N
F059659	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_10056722	F001840	N/A	MKEEKDSAFLICDCFSHGLLVEKFEDEEEVCLSLFERGMDGRILRWSERLRWCWQIVRYGKPWSDFIILNIENQKRLKEFLK*
Ga0102859_10056723	F059659	AGGAGG	MGMYNSVDCHYPLPMPEDPKGYTGSHGFQTKDFECALDVYIIDKDGQLLIERRDTEWIEGDPNGEGFLSKIGHLKTIKTWLEPLTNTCTIQFYDFIDSNKTDYDYFITYEAVFINGKISSVKIINFEANDNTERKIRDVEFAKKNKEFYKFRQTWKYKYFIKPYNRVISFVFFKTIKVLSFLSSVLYKIERNIRI*
Ga0102859_10056724	F009682	N/A	MIKDLYMKNINDKILVQSDDLKFDGKNIIIPSYYDGVICDYLNRVDVKGMDDADHQDYLAFRKFFEDIMNYKADQGGN*
Ga0102859_10056729	F022862	N/A	MKFTPQQYELICKTRDEIRNLNAKQHALYDNLTKELNITIYAEDCLFDYIYNECGSIDDIEARM*