Scaffold Ga0102859_1002272

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1002272
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4400
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F021535	Metagenome / Metatranscriptome	218	Y
F031497	Metagenome / Metatranscriptome	182	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_100227210	F063705	N/A	MTKSSMFLEYMKLHLISLNQDWEDTKNGAPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERYE*
Ga0102859_100227214	F021535	N/A	EEETGWGGECEFLRGEVISESEYDNMCRDCDATDQMEYCENDCGEICGNCNWLGEADLEAVATCQTHKIYLDTKVPEYRKAEVK*
Ga0102859_10022725	F031497	AGGCGG	MSKSPEIKVAESLVNLMDDHWFNPTMFGRYLAEQPLYTIDRVMEMVVSVISEQAKIYDVYLNRGTSSEGLLLANELNECIKAYQQDNNLNNLKLPSRSYKVKREEPLVRQSQFGWKEEEDPFS*
Ga0102859_10022729	F000263	AGG	MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARNEA*