Basic Information | |
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Taxon OID | 3300007708 Open in IMG/M |
Scaffold ID | Ga0102859_1002272 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4400 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2342 | Long. (o) | -123.9167 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F021535 | Metagenome / Metatranscriptome | 218 | Y |
F031497 | Metagenome / Metatranscriptome | 182 | Y |
F063705 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0102859_100227210 | F063705 | N/A | MTKSSMFLEYMKLHLISLNQDWEDTKNGAPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERYE* |
Ga0102859_100227214 | F021535 | N/A | EEETGWGGECEFLRGEVISESEYDNMCRDCDATDQMEYCENDCGEICGNCNWLGEADLEAVATCQTHKIYLDTKVPEYRKAEVK* |
Ga0102859_10022725 | F031497 | AGGCGG | MSKSPEIKVAESLVNLMDDHWFNPTMFGRYLAEQPLYTIDRVMEMVVSVISEQAKIYDVYLNRGTSSEGLLLANELNECIKAYQQDNNLNNLKLPSRSYKVKREEPLVRQSQFGWKEEEDPFS* |
Ga0102859_10022729 | F000263 | AGG | MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARNEA* |
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