Scaffold Ga0102899_1108236

Overview

Basic Information

• Taxon OID: 3300007706
• Scaffold ID: Ga0102899_1108236
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 679
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2024
  • Long. (^o): -123.9409

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F019834	Metagenome	227	N
F027179	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102899_11082361	F027179	GAG	MPTLKIEKFIYMADGLFLYEKENSYVVMDQNDNVLKEAKTSATCSRYILKTLQSRRAAEREAIEEINKSKV*
Ga0102899_11082362	F019834	GAGG	MKELKFTITGTIFVPDNVEYENDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDENLKSHDIRPVEYEDAYFED*
Ga0102899_11082363	F002406	N/A	MENLHWIRAMADRLRDTLSSEYDDETKDLIIRAFMQGLFQQPAIVEELKSSSLIESDYFEDEE*