Scaffold Ga0102823_1005721

Overview

Basic Information

• Taxon OID: 3300007692
• Scaffold ID: Ga0102823_1005721
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3819
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F011629	Metagenome / Metatranscriptome	289	N
F069439	Metagenome / Metatranscriptome	124	N
F103560	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102823_10057211	F069439	AGGAG	MQKIQNTQFTISTNKMFNNSIFIKTNAKNNLTYMCSSMQKVALCLQAHNLKNATVRILTKRFNNVCAKKLAQAAVIRIANA*
Ga0102823_10057212	F103560	AGGA	MPKFGFTVINYNTLLIVNCTTQEQRYANNVTLPSLYAVTQKQLAKLFKTAT*
Ga0102823_10057216	F003769	AGGGGG	MQQLKTLTVKTSNKVKSVHVDTLYAVIENCYNSLQVIESDCTASNYFCASANIFAQLQYLYAENETNDYVSLESVMDVFANNVTYYDEEYSLYESVVQNTAMQKIKLQDYACLSN*
Ga0102823_10057217	F011629	GAGG	MLSNWTKLENLNTTQVKELITHRFGGSLKQVYLNKCYSNKQEIADKRNMAFAVDGDAYRGVDLTALAQEIGCKRVKLHTAFLRGMQSGAWLRLQHVNYNK*