Scaffold Ga0102824_1055581

Overview

Basic Information

• Taxon OID: 3300007681
• Scaffold ID: Ga0102824_1055581
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1042
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F053969	Metagenome / Metatranscriptome	140	Y
F086722	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102824_10555811	F001588	AGGAG	MQNTTTKTNNVFLNAADAAIVVTVNNVQVAAVYTADALVKVFLQHNINVNTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALA*
Ga0102824_10555812	F053969	AGGAG	MQTLTQVEKAFIVNFLSNTFANLTQNNTDSLLEALEPAEAEYFAESYFVRLQDAQEVLHNLNILYATAEQEPARFTFTIQQAAAAIVSYDTEYRECIIEQLEYACTEDLQRLYAEFANTACKQTNFATLPARMYNNY*
Ga0102824_10555813	F086722	N/A	FLQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPVQ*