NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0102910_1023356

Scaffold Ga0102910_1023356


Overview

Basic Information
Taxon OID3300007667 Open in IMG/M
Scaffold IDGa0102910_1023356 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1558A-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1395
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2763Long. (o)-124.0055Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091608Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0102910_10233561F091608AGGGGGMKLSRKKRTPPLDLGKLQEVGSENRSSSKLTALAPYFLLLEEMKDKRSLNTPFVSLEALARITTARIEGHEEDNVLGSCPDTWGRETIRVPLPLLIALTDAWNSYRSADVGISLGESFGVEGKGQGKSKMKGSLEQRLKEHRIMNAVELAYLASGNTAEEVDAISLEVAIEQVAEVEELSSDTVRKYYKKHSKYLRGELKSRGLLKG*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.