Scaffold Ga0102908_1014709

Overview

Basic Information

• Taxon OID: 3300007665
• Scaffold ID: Ga0102908_1014709
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1456
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2763
  • Long. (^o): -124.0055

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046022	Metagenome	152	N
F092744	Metagenome	107	N
F105929	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102908_10147091	F105929	AGGA	MTTFTGYIARETEKAYGVLVNLTDEKFAWIPKKKIESETRSELAAVVVLAGETIQRKVWLTDLEI
Ga0102908_10147092	F092744	AGGAGG	MATITTLETFAAKKLISVELSKLTNRKGENLYLVSFLDAMHNQEVTLGRYRSLTEAKESFELHKKAAQWGELYA*
Ga0102908_10147093	F046022	GAGG	MKINRQILTARALQDIQTKTAAQRAVDPVEKSTKILSWKEIFDAQLKGESDA*