Scaffold Ga0102825_1000031

Overview

Basic Information

• Taxon OID: 3300007655
• Scaffold ID: Ga0102825_1000031
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28348
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F018089	Metagenome	237	Y
F032048	Metagenome / Metatranscriptome	181	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102825_100003117	F059441	AGGAGG	MKTWSSKITYTVFDIGADCETKEDYIEYVKETFEQEHNIYLRDDEITDIQKEESYNE*
Ga0102825_100003118	F004856	AGGAGG	MSDWLEGTKPKKIEARYSAYISWDLDELGIDWDEIEDWDLLRADLHITFKDGTQKVYENWQDLDVDYKHNFEEVLILDEDWNQVEGLN*
Ga0102825_100003120	F032048	GGAGG	MMSNIHNERTLEQIYEQVLEDDAKLLLTEEIDEICYLYELHADDDRETILEFLAESIYYNQHTMEVAK*
Ga0102825_10000318	F018089	AGGA	MAKSTAKTSFTNTNPTAGFTIQDELAKASYGMVRKIASQFSKAEKCPKDIKWGTIHGHFLQKLNDPKNPLKQGEVAKILAMKSLPSADLKAMRSYKKLVNLA*