Scaffold Ga0102825_1000023

Overview

Basic Information

• Taxon OID: 3300007655
• Scaffold ID: Ga0102825_1000023
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31594
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (45.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006585	Metagenome / Metatranscriptome	369	Y
F009068	Metagenome / Metatranscriptome	323	N
F031083	Metagenome / Metatranscriptome	183	N
F037741	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102825_10000232	F031083	N/A	MKNMNTEYKMGLGLPRGSKVIVKAGNRQADITLIENEDGHTWRVQIDRDLPETEYPTLENAILSAQTLFREVV*
Ga0102825_100002322	F006585	GGA	MALNKLQKKDFSIAVKTGTDANKTKFKKEATQGEYYFATDTKKLYLAETTAGASDSTLAEFTPTATGV*
Ga0102825_100002325	F037741	N/A	MPLFGLGLFIGDTDADSQVGPPTPGGPDGVIQTEAEDFLLVEAGQFLAFDE*
Ga0102825_10000236	F009068	N/A	MAILQQSSNGNGPISGWPIEPINAGQYLAVCLDVKDSFGIQRPSYDDPSVIETLDVCRFLFGTQDGQMVQTGEMKISAHEKSKLVGVLTSWLGSNPGAGFDTESLRGKGCMINIIQKTSQKGTVYSDITSITPVMAGMEAQVPQAASFNIPGGASAPAPQATTQVTIDQPQVVQPAPVQVPVQVAQPVAPVAQQATFTAPVTSTVQPPF*