Scaffold Ga0105531_100009

Overview

Basic Information

• Taxon OID: 3300007648
• Scaffold ID: Ga0105531_100009
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764588959 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 264832
• Total Scaffold Genes: 266
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (13.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F061925	Metagenome	131	N
F089056	Metagenome	109	N
F097525	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105531_100009124	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKTMTTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQANKTWDYITKQIIDIKFSQLYKHLNLEK*
Ga0105531_100009126	F047127	N/A	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0105531_100009188	F089056	N/A	MNIFCKIILPLLCIISCSKRKEADNTMVLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGIPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEIFFRKGIQ*
Ga0105531_10000943	F097525	N/A	MQQKKIMFKIQNTYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKV*
Ga0105531_10000965	F061925	AGGA	MSWEYSINLDSEESVSSVVTDLKICELFSSSTTDYIDWKNPESIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*