Scaffold Ga0102855_1054087

Overview

Basic Information

• Taxon OID: 3300007647
• Scaffold ID: Ga0102855_1054087
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1088
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102855_10540871	F023484	N/A	IASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVIDGDEVAKCKTFIRNHS*
Ga0102855_10540872	F022313	N/A	MTYHYQPQQEYESTKLERVLKELQAIVKRDGKRHLMDQQLSHSMQELLQYEVIPLLEAEINYDPTPQY*
Ga0102855_10540874	F098218	GAGG	MTSFSSWSKRPEDMRAAAKARAVAALHKKHSKGLTQLERAYLHALKTGRLDLDD*