Basic Information | |
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Taxon OID | 3300007647 Open in IMG/M |
Scaffold ID | Ga0102855_1049500 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1140 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F049286 | Metagenome / Metatranscriptome | 147 | Y |
F077246 | Metagenome / Metatranscriptome | 117 | N |
F091977 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102855_10495002 | F091977 | N/A | MTLTEKKIQRMIDNYQFIRTCLLTDYNDKTVEEQMTQLYYFLRDQMQDVERIDRQDAIDNRNRLNSSGYTGKAGH* |
Ga0102855_10495003 | F077246 | AGG | MDLSNNNIVIIPESWDEIHKYISDTFEHKAYATVLALMVENYVLHEFSKIGGYAFSEWKQEYLKNA* |
Ga0102855_10495004 | F049286 | AGGAG | MPKYEVTRSYTVVCVATVEADTHDHAEEIACGSDDIHWKEYDNDYDYEVYVDEIEES* |
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