Scaffold Ga0102855_1035630

Overview

Basic Information

• Taxon OID: 3300007647
• Scaffold ID: Ga0102855_1035630
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1367
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036003	Metagenome	171	N
F062259	Metagenome	131	N
F081883	Metagenome	114	N
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102855_10356301	F036003	AGGAG	MNTRMFNYKDKSVMFINCSLDHCYNTADYMIKRDKNNGYWKPRLYDDYDQDHPSVESIYDWIEIKDSVTDLPPVTTDEIERAYNDLR*
Ga0102855_10356302	F062259	AGGAG	MKTEKELDIEVREAFDRAVDSIMFDYMYMGTEKGDDLVYMMFKHIETREYIKIPKCGVAFKKRKEIV*
Ga0102855_10356304	F081883	GAGG	MTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGITLSDTSWHETADTVSSYKLDDERELDFDGGDNLR*
Ga0102855_10356305	F089518	N/A	VEYIIHISKKGGECFAYHSTKDTSELDRLVAKYLKMRGITIEVKKRNLS*