Scaffold Ga0102855_1013152

Overview

Basic Information

• Taxon OID: 3300007647
• Scaffold ID: Ga0102855_1013152
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2293
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F009266	Metagenome / Metatranscriptome	320	Y
F019834	Metagenome	227	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102855_10131525	F009266	AGGA	MTDKERKVLDKEIQYLCKHFIDRVQAIRDYTGINPDYTVLKEVETIEYLYKSILEERKHDGTYFCVGTSGWNVVYLRNKKTYKKGEKFWIKIYHSFVFTDNFD*
Ga0102855_10131526	F002398	GAG	MIPAILFTLINLNPINNFVSLKTYISENAKIHCKVYFINEDLPDFPRVKLIEGSRVDFFKYLDTIGVEHTKVGSYYFFTRKSK*
Ga0102855_10131528	F019834	GAGG	MKELKFTITGTIFVPDNAEYEYDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDENFKSHDIKPVEYEDAYFEE*