Scaffold Ga0102876_1042629

Overview

Basic Information

• Taxon OID: 3300007642
• Scaffold ID: Ga0102876_1042629
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1273
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2319
  • Long. (^o): -123.8812

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F056414	Metagenome	137	Y
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102876_10426291	F079788	AGGAG	MDTDDEIESWATIALGLIASIFFFIGLMAVVAAACMAWGYYTYEPICGSIAALFTQECKK
Ga0102876_10426292	F027776	N/A	MVVRLMNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGAETTQLRLDQEMEILRQELKSIQIELDYAKAN*
Ga0102876_10426293	F056414	N/A	MYEMITSSSTTGVNMKLTNYQRSQLKAAACFGCDQIDKVAASLQRENPEAFLRDSELSQRDFYHQPMALYRSYVQRFIPRRREQDNERDQVMAQNHYLQQTFQIGVGA*