Scaffold Ga0102876_1039700

Overview

Basic Information

• Taxon OID: 3300007642
• Scaffold ID: Ga0102876_1039700
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1325
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2319
  • Long. (^o): -123.8812

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022886	Metagenome / Metatranscriptome	212	N
F030763	Metagenome / Metatranscriptome	184	N
F036239	Metagenome / Metatranscriptome	170	Y
F053288	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102876_10397001	F030763	AGG	MLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMAIVREPLAEGTETFETAYHFSLVEDDIRPANIIEDIIYHSVLEDMELFGESLVHYLN
Ga0102876_10397002	F022886	GGA	MLTIKNWDKLTRMFRSQIDIGELELYYEIIYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVKV*
Ga0102876_10397003	F053288	N/A	MITIKNYNSDVGHGTFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNSKKRTKHVVSEDLYEVYIQDMVSDKWRRTLNLTKPQLHKSAFYNWVESVIDDEYGLPF*
Ga0102876_10397004	F036239	N/A	FATVLNLNQVYKPKWDIELTTNDTTGVITFRILDNVTQHLIAKSHLTKPNIETLQKFREQYEMLVDDILEEAQSYVKKATTNINGTTGIINQVQSASTNVLYGSSSLSTTTPAHLIQTLQTLQQQIDDYNKKL*