Scaffold Ga0102865_1050845

Overview

Basic Information

• Taxon OID: 3300007639
• Scaffold ID: Ga0102865_1050845
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1228
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F006935	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102865_10508451	F006935	N/A	WAEEAKEILTVRKEIIMDDDVTDEQLGTIIRMMYRAKVEAQNETIKRTKQNLEL*
Ga0102865_10508455	F006547	AGGA	MKWLLILLLPFSISAQVYDTTYQMVYYQKSLIKKGKVELYVYSSYDLWWADESGMGITLTIPNKRKKKKHKH*