Scaffold Ga0102865_1015068

Overview

Basic Information

• Taxon OID: 3300007639
• Scaffold ID: Ga0102865_1015068
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2177
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F010618	Metagenome	301	N
F019834	Metagenome	227	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102865_10150682	F019834	GAGG	MKELKFTITGTIFVPDNVEYENDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDENFKSHELGIFEYEDFYFED*
Ga0102865_10150683	F002406	N/A	MENIKWIRAMSDRLRDELSSEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDAE*
Ga0102865_10150684	F010618	AGGAG	LSLKELILKLQELDKKYEQYSQDTEVVLAIHLKNEFNPEVNLDYIDEVLHPALDTYSGYICRIVLCGEIEQED*