Scaffold Ga0102865_1013353

Overview

Basic Information

• Taxon OID: 3300007639
• Scaffold ID: Ga0102865_1013353
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2295
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019478	Metagenome	229	Y
F022886	Metagenome / Metatranscriptome	212	N
F030763	Metagenome / Metatranscriptome	184	N
F053288	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102865_10133532	F030763	GAG	MLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMAIVREPLAEATETFETAYHFSLVEDDVRPANIIEDVIYHSVLEDMELFGESLVHYLNTL*
Ga0102865_10133533	F022886	N/A	MITIKNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVNSVYDAIVDVVVRHNLKVRV*
Ga0102865_10133534	F053288	N/A	MITIKNYNSDVGHATFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNSKKRTKHVVSEDLHEVYIQDMVSDKWRRTVNLEKRSLNKSAFYNWVESVIDDEYPLPF*
Ga0102865_10133536	F019478	N/A	MVGTQFWNGRFTCLRVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFENWKNVTKTFGDALKKQF*