Scaffold Ga0102906_1034978

Overview

Basic Information

• Taxon OID: 3300007637
• Scaffold ID: Ga0102906_1034978
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1491
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2022
  • Long. (^o): -123.941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005352	Metagenome / Metatranscriptome	403	Y
F035836	Metagenome / Metatranscriptome	171	Y
F062792	Metagenome / Metatranscriptome	130	N
F083238	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102906_10349781	F083238	N/A	MAGTLAHELTHAKQFCKSQINMVDHVWRHNGVHLDCEDVDYMDAPWEVEAYEYERILVDLLWENV*
Ga0102906_10349783	F005352	AGGAGG	MIHPASDKPYVQLICHPYEHVTSINTRITIDVMQKDLSRDDMVEIFETFMKSIGYHFGQNETLCIEERL*
Ga0102906_10349784	F062792	GAGG	MTPQEIDDYKRKWRMGSYFQHHTHTDVRNDCVEWCKENCETQEWDIKYFTDIYGDTIRFESESRFNDFGEWYKDLMYSWSVV*
Ga0102906_10349786	F035836	AGGAG	MKKDRFDLEAALMNAWNTSEDIDLIYHNTDSLKLNAKDCDTLQNQLLGLKHINELRMTKLWDVFEELIKEGEIK*