Scaffold Ga0102906_1020550

Overview

Basic Information

• Taxon OID: 3300007637
• Scaffold ID: Ga0102906_1020550
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2021
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2022
  • Long. (^o): -123.941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038657	Metagenome / Metatranscriptome	165	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102906_10205501	F038657	AGGAG	MDVLGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIEYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVNPKPADEWRRAFSVWVMPSGAEHAYLWQSFSFAESSAFNSICGLFWADKANNVGKLPVVEYKGSKHIQVGAGNSSELSFEFVKWGDRGFNVPEWYIDPDAPADDDDGFVSPNEGLADKVAEMVAKTELSDSDIPF*
Ga0102906_10205503	F093807	GAG	VTQFSDIVELHRLKLNQEKDEWYIHVNNGAGYTEVKQGNTLTTTYHADGRKEVVIDAN*