Scaffold Ga0102901_1069669

Overview

Basic Information

• Taxon OID: 3300007634
• Scaffold ID: Ga0102901_1069669
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1013
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2024
  • Long. (^o): -123.9409

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019478	Metagenome	229	Y
F024555	Metagenome / Metatranscriptome	205	Y
F038242	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102901_10696692	F038242	N/A	MLTIKNIKQLELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGKGYNKEIEVRLGRDINQGEYQIFVMGLHLVTRHFVTIDDVKTKGGLASEISKVLAKAEHWWKTEATK*
Ga0102901_10696693	F024555	N/A	MLTIKNIEKLYKQDVGDWRIGKVVTLDSSYLIQLYKHNRRETKQVNIERTPIGEGDTALYELWFWADDSGGAKPIRRLLRKCDFELGPSYVIKNIENMMIL*
Ga0102901_10696694	F019478	N/A	MILKIKNTDRMVGTMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFEDWKNVTKTFGDA