Scaffold Ga0102901_1029366

Overview

Basic Information

• Taxon OID: 3300007634
• Scaffold ID: Ga0102901_1029366
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2024
  • Long. (^o): -123.9409

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027416	Metagenome	194	N
F054034	Metagenome	140	N
F084236	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102901_10293663	F054034	GGA	MLTIRTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDRDRHWKGSIVTYYKMYIAGGTSAMTEFIMIQTINTLDRMKKHLIYIHDKYKIPF*
Ga0102901_10293664	F084236	AGG	MLTINNQYKIVAESFVVSKNGLNEHWTVDDITETPYVYDIRVLRKLGIFDTMERTIRVNREKNKLEMYSVHITAGGHIIDKDQIRVRNIQTADAMLNELKTIMEFI*
Ga0102901_10293665	F027416	N/A	MLTIENIQKSKGCKVGANGMVWKILRTKEFDYNSENIYSIVLKTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRVVERQDMVDVYNFLRLIKKEIERAIC*