Basic Information | |
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Taxon OID | 3300007623 Open in IMG/M |
Scaffold ID | Ga0102948_1011773 Open in IMG/M |
Source Dataset Name | Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3047 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Source Dataset Sampling Location | ||||||||
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Location Name | South San Francisco, USA | |||||||
Coordinates | Lat. (o) | 37.4962 | Long. (o) | -122.1329 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005879 | Metagenome / Metatranscriptome | 387 | Y |
F031863 | Metagenome / Metatranscriptome | 181 | Y |
F056582 | Metagenome / Metatranscriptome | 137 | Y |
F057337 | Metagenome / Metatranscriptome | 136 | N |
F071664 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0102948_101177310 | F005879 | N/A | MFNEQIFWKDTFNGESARGGIFTRVVDLKKFLQLVEVNENGQGGEVVGLRFSDNNLEVIVKSETE* |
Ga0102948_10117734 | F071664 | N/A | MIKKIKSKLLTYLFTDWVKTETNLETLKLTTQMLKNREIQITGIKPVLGFRSHLSEAQKDNPTIQ* |
Ga0102948_10117735 | F031863 | N/A | MYWTKDMIPVGNDLFVIKRKFKIENFEKVIKHFGAQTVCENYHCETVLRGRDGYFYLCDKVDDVKIIE* |
Ga0102948_10117736 | F057337 | N/A | MTYSELSTMTIEDLRTLNSMVVETIKSKKSLLALEKKDELFVGANVSVNHPKLAGKQCRVTKINRTKAVVEVLNGIGSYNVPLTMLTING* |
Ga0102948_10117737 | F056582 | GGA | MTRYKTYKIENTPSEKFPQMVTISKKVKGNLFEKKFISEQKAKAWIEFGAAHKLINNGAKKVKNELSSIGILTETAAW* |
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