Scaffold Ga0102948_1004533

Overview

Basic Information

• Taxon OID: 3300007623
• Scaffold ID: Ga0102948_1004533
• Source Dataset Name: Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5162
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4962
  • Long. (^o): -122.1329
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015039	Metagenome / Metatranscriptome	258	Y
F020852	Metagenome / Metatranscriptome	221	Y
F021995	Metagenome / Metatranscriptome	216	Y
F041087	Metagenome / Metatranscriptome	160	Y
F061769	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102948_100453311	F041087	AGGAG	MMDLWDEVIHQIENDLEDRDTTALYEMLQRVPKDVLIAYLPEEREFIVSEN*
Ga0102948_10045332	F020852	GAGG	MLTLKNKTTTTTHADEDYSCVVTRWDAEGFAECNGSSIWDYAGDLRVSVSAVEVHEATYEDGDTSTMVYVEHNANGTGDWRIYTDDGFEESISAALGFDVTFTEQGMQDTGVASLET*
Ga0102948_10045333	F021995	N/A	LYNATANEGNMFAVVDFDRQKSFFFTSFQTASDFITQYPVIDNTVVVDFSEQYPQAELL*
Ga0102948_10045336	F061769	AGGAGG	MKLAYCDKIADTIRKALVKYDTDGILNGPVGPIKSDLDPVGGWFVSPKKTMLVWDSNGKAYSVTVEEQPMMDIEFEDVDKKVVDNEFN*
Ga0102948_10045338	F015039	AGGAG	MAGADNTKTVYVTVALEVLRDADVQDIMSECDYSFEHSDIVDTELMGETDYA*