Scaffold Ga0102863_1070013

Overview

Basic Information

• Taxon OID: 3300007622
• Scaffold ID: Ga0102863_1070013
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1028
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027416	Metagenome	194	N
F050949	Metagenome	144	N
F067472	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102863_10700131	F027416	N/A	MLTIENIQKLKGCKVGANGMVWKILATKELDYNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYHLTSSKSDIMRVVERQDMVDVYNFLRLIKKEIERANLC*
Ga0102863_10700132	F050949	N/A	MLTIENRGRLISDSFYDKMGMYWVVDKIIDDTDEYLILIENRKGPKEIFSLKKQNLYGIGYELGLLDDNRHINKNMYKVKTYIPIETISDKRLLIKRMTEMIDTSYDI*
Ga0102863_10700133	F067472	N/A	MLTIENIQNIEGTEFQMSSGQKYVIGIVRSWYDHYSCGVFPLMENNVASIKDGIIYKLHRSRRNSRGYEMTSANSINPIVYVKPENLTLDNFVLELHIQTSIKRYANNRK*