NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102863_1033371

Scaffold Ga0102863_1033371


Overview

Basic Information
Taxon OID3300007622 Open in IMG/M
Scaffold IDGa0102863_1033371 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1449A-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1480
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2327Long. (o)-123.9168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046375Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0102863_10333711F046375N/AISFSVSDYLFDWENSKVHKQFFIDRFNSLKSLTEWAGKSTFQIREEIIGAFQCKRYAHMECTNATHFIWLDTDICFDDKILYYMEASINRLNETDKHIDKYFITPEIVKYWDTTWDCLVNINYLNKPLDYCKTNNPFSESGEVGDVELETVFNDIPGQPRTKFGAGWFTLLSKPLLDRMPLPESMGAYGPDDTFLMWGIEKLNETGENIYQFKLKNYIVCENYIYRNRIHYDTLIKRIDRKEEFKKQSYSVFQEELNKIK*

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