Basic Information | |
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Taxon OID | 3300007622 Open in IMG/M |
Scaffold ID | Ga0102863_1016254 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2075 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2327 | Long. (o) | -123.9168 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F063690 | Metagenome / Metatranscriptome | 129 | Y |
F092025 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102863_10162542 | F092025 | N/A | MAEIINFEDVVKQPTEGPKFDPTKKYAWSPETSFTISGNDFGLLLNTLRSITSTKEAQTIILAHEAGDVLEKTLAHGVESGIIVEVPQQ* |
Ga0102863_10162546 | F063690 | AGG | MAKIPKTKVYNPQKAEAYVGRGVLRNGDTLTAIKGHFSPVPNGHLIKKDGNALKKGGTVVKVGGQTHKVFKKKVDKGIGSKGDVVVDHTAGRPAGKWDKINLTEKSKAKTVKQGVASVRK |
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