Scaffold Ga0102863_1015729

Overview

Basic Information

• Taxon OID: 3300007622
• Scaffold ID: Ga0102863_1015729
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2106
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004547	Metagenome	433	Y
F006019	Metagenome / Metatranscriptome	383	Y
F081077	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102863_10157291	F081077	N/A	TKKYLDLPEDTPLTTEVLENARTSVYPAYEAIAETGTISFGNKNPFSNIVTGINKLTGGKNALMQDIPDTYSMDAATAIQRLKELRSDGSAYLRSGTNIMKPNPKEVARGNRYLAEANKLEKAIESHVVKLGQPELINQFRDARRYIAKTFTVEKALNPQTGVVDARKIAKQLDQGVPITDELALVGKYAKAFPKTTKVVAEAPPPFSALDLYGAGAGAGVDLLTGFPALSLLAPARIASRYGLMTQPGQRMLATPQYTPRTSPFVPYQGLLNNQE*
Ga0102863_10157293	F004547	AGG	VKTLVYFTVLVIFWLLLMDTPLAKELVKEMSMATEAGEIVLTSDECVFKKQGLQGYDYAAYATEKGHANHEGCWKSDSYEGKQAVFIYFPEINQTAVFDAKLFKPKATI*
Ga0102863_10157294	F006019	N/A	MTFITENNIANLYSALIEFPVFDEYKLPPASKVDFVIVHDNSICGQYEPPEQGEPHIITISTARHSHLYPVLMTLAHEIIHMCVYLDSPKTDRYTSHKGLFLKLQKRVANHLGFDPKEL*