Scaffold Ga0102863

Basic Information
Taxon OID	3300007622 Open in IMG/M
Scaffold ID	Ga0102863_1003904 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007622 Open in IMG/M

Scaffold ID

Ga0102863_1003904 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3986
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3986

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2327

Long. (^o)

-123.9168

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008494	Metagenome / Metatranscriptome	332	N
F008552	Metagenome	331	Y
F009750	Metagenome	313	Y
F033803	Metagenome	176	N
F071239	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102863_10039041	F071239	AGG	VKKIHLSNFRKKYDDKSYQIVKDAIGKNSFSASEINIQKIVDNISDPVVKKNFTHWSYGYDFAILN*
Ga0102863_10039043	F033803	AGTAG	MTINLRKNIARFIYIIDQTTDVDSRAKILKELDLTENEFQELAVNLLQFSNSADKEWYCCNPEYHGFIETFKIISEKTDTEFLI*
Ga0102863_10039044	F008552	N/A	MIISFEASANIDTTLFGYFSMQYDPDFFSDIKENLTEISKKDTLTFKLDPEEIKLLQGSYENVRRIISLPDVEHNKVTGVFKRNFDTSVFKIFKSAKLHIDRDYFYFTGHYENKDGTKPVEFQSLNFDARFIDSLQKIYAKQEIVVN*
Ga0102863_10039047	F009750	N/A	LSINKIARLKETKVPMILKNAIFEPSHTMKEIVTAIYQNGVFKDNKILKPHLTDRVGIRMKFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNIGDDIWDKFKTHYEGNYSYKPF*
Ga0102863_10039048	F008494	N/A	LSNIFILLATHIHDDIISHQTKESEMTKKEVINLFMSAVGQYTSAIDKTAESNISYRKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQELIVAKREAEYLLETARANESRIKAEVDQMKYIIRALEAKEEA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102863_1003904

Overview

Ecosystem & Geography

Associated Families

Sequences