Scaffold Ga0102863_1002029

Overview

Basic Information

• Taxon OID: 3300007622
• Scaffold ID: Ga0102863_1002029
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5385
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F007523	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102863_10020291	F007523	N/A	RPAMQRLAVSTKDTGEAQKLLALALDISKGRGLELETVANALGRAQDGNTTALGRLGLGLSKAELATLSFTDVQDKLSNLYGGAAAANAETFQGKIDRLKVGFDEAKESLGVALLPQVEKFITFLNTTGVPALESFIAGLTGDDGLNNAFTETQRTAFAVGNAIAVVARQIQGFITFLSEAIGLIIGLTNEAIRAINLIKPGADIGYISNPSRVTGSLGMTSVPNTSALSSLGVSQQVTNNITVQAVDPEGAARAVAKILNDSASRATPQLYNNGIRGG*
Ga0102863_10020292	F000468	AGGCGG	MSVFTPDWKLTVAGVEYTDITISDITHAAGRDDIYEQPNPSYLQVELISLSGSTLPFEINDSLSLQVKNSSGTYVNLFGGNITDLTVAVGATGQLATVINYTILAMGSLVKLAKEIYNDALSQDLDGAQILTLLESVLAGTWNDVPAASTWVGYDATETWANALNLGLGEVDAGLYTMEQRTADPDTVYNIASLIANSAFGYLFEDNQGNIGYADADHRQTYLLANGYTDLSANQAFGSNLKIITKSADIRNDIYINYGNNFGSQKVASSAASIALYGYRAQSINSVIHSAVDAQEVADRYIDLRAYPQPLLQSITFPITNPEIDNGDRDALLGIFMGQPINLQDLPIAIAGGEFEGYVEGWKWSTRFNELFLTINLSPVSFSQVAMRWNTVPVGEAWNTLSAILTWENATIVA*
Ga0102863_10020298	F002044	AGTAG	MANTRKHIKRKKINRRVVRQSPEPLSKIDQHYTALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDLD*