Scaffold Ga0102863_1000069

Overview

Basic Information

• Taxon OID: 3300007622
• Scaffold ID: Ga0102863_1000069
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35541
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (84.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015703	Metagenome / Metatranscriptome	252	Y
F036141	Metagenome / Metatranscriptome	170	Y
F041720	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102863_100006910	F015703	GAG	MLTVRLVGRMIWLCGKEGERLFQGFLSSLDKKEFEVKRDMFRNGRLVVEIEQKHRDQDWKPSGLSVTSAKWWIYLFSDDAFIAVEVARLKKYIEINNSMELKTFAPRSYNPTRGYLLLEEDVSKLMASELYDTKGKK*
Ga0102863_100006934	F036141	N/A	MEWLVPLVVAVIGGPLVVVVQSLRKENTTQHAEARELLKMVASKVDKVDDKLDGHINWHLKKPTRKSNKEQ*
Ga0102863_100006942	F041720	AGAAGG	MARTENLFLSQEQEAYLAWLLTPEDSRMPSTKKAWSEEHGVHFNTLGTWEKKKQFIERWKLGVEGMSQSPERTQKLLDAIYIKGISGDTKSAELYLKATGYIQQSQTLNIKTETSIKELSDAELQAAILEITQNQTKKVSVLPTMSIEKVG*