Basic Information | |
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Taxon OID | 3300007622 Open in IMG/M |
Scaffold ID | Ga0102863_1000069 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 35541 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (84.09%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2327 | Long. (o) | -123.9168 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015703 | Metagenome / Metatranscriptome | 252 | Y |
F036141 | Metagenome / Metatranscriptome | 170 | Y |
F041720 | Metagenome | 159 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0102863_100006910 | F015703 | GAG | MLTVRLVGRMIWLCGKEGERLFQGFLSSLDKKEFEVKRDMFRNGRLVVEIEQKHRDQDWKPSGLSVTSAKWWIYLFSDDAFIAVEVARLKKYIEINNSMELKTFAPRSYNPTRGYLLLEEDVSKLMASELYDTKGKK* |
Ga0102863_100006934 | F036141 | N/A | MEWLVPLVVAVIGGPLVVVVQSLRKENTTQHAEARELLKMVASKVDKVDDKLDGHINWHLKKPTRKSNKEQ* |
Ga0102863_100006942 | F041720 | AGAAGG | MARTENLFLSQEQEAYLAWLLTPEDSRMPSTKKAWSEEHGVHFNTLGTWEKKKQFIERWKLGVEGMSQSPERTQKLLDAIYIKGISGDTKSAELYLKATGYIQQSQTLNIKTETSIKELSDAELQAAILEITQNQTKKVSVLPTMSIEKVG* |
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