Scaffold Ga0102871_1087192

Overview

Basic Information

• Taxon OID: 3300007620
• Scaffold ID: Ga0102871_1087192
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 900
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2311
  • Long. (^o): -123.8825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F010618	Metagenome	301	N
F019834	Metagenome	227	N
F098687	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102871_10871921	F098687	N/A	DCHYEFTCEDGKFEETCSYETFKEAVMDGKWGGAKEWEMLFEESEEVVS*
Ga0102871_10871922	F010618	AGGAG	LSLKELIAKLQELEKKYEQYSKDTEVVIAVHSKNEYNPEVSLDYIDEVVHPALDTFSGYICRIVLCGEIEGED*
Ga0102871_10871923	F002406	GAG	MENIKWIRAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDEE*
Ga0102871_10871924	F019834	GAGG	MKEFKFSITGTIFVPDNVEYEYDFENQIYSFKINDKTYSLIAGLEADEKEIIVTDENFKSHDIKPFEYEDAYFED*