Scaffold Ga0102897_1025819

Overview

Basic Information

• Taxon OID: 3300007617
• Scaffold ID: Ga0102897_1025819
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1870
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2871
  • Long. (^o): -123.9424

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007113	Metagenome / Metatranscriptome	357	Y
F010916	Metagenome / Metatranscriptome	297	Y
F084243	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102897_10258191	F010916	N/A	MTVSKQIHTDLLGMVSKHDYSYMMSDSHSVWESGMVYEKHIIAKIHALCAIHREDAEALYNEVKAVAGPDYTDYDKNGYGLKYRVINQWFKPYIGE*
Ga0102897_10258192	F007113	N/A	MKLELTPEQLKTVEIALCELFNSDTWISGREEAEIDRIAERAGYLLNIIQLHNTMNSSKPIRTIK*
Ga0102897_10258193	F084243	N/A	MNSQNKNELVFDNIANELFEDKLMSTHWSEVNKRYLLRLYHPLKNVMEYLSKPKWTNVIHEMGESSPGYYSCVYKSLKEIGVLKYNPIEKMLERGPNWDRFYGDSSWDWFYMNTSSGMRSYEIFNKVGHRVNKRYPSNYRTGVVFSN*